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accession-icon SRP070853
Key regulators in two different colorectal cancer cell lines 1638N-T1 vs. CMT-93
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

In this dataset, we present RNA-Seq data of two colorectal cancer (CRC) cell lines, namely 1638N-T1 and CMT-93. Overall design: Two colorectal cancer cell lines in 3 replicates

Publication Title

Computational Identification of Key Regulators in Two Different Colorectal Cancer Cell Lines.

Sample Metadata Fields

Cell line, Subject

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accession-icon GSE37209
Expression data from Paneth cells isolated from mice on calorie restricted or ad libitum diet
  • organism-icon Mus musculus
  • sample-icon 7 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

Paneth cells recide in the intestinal crypt bottom and are part of the innate immunity and of the intestinal stem cell niche.

Publication Title

mTORC1 in the Paneth cell niche couples intestinal stem-cell function to calorie intake.

Sample Metadata Fields

Age, Specimen part

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accession-icon GSE57818
Impact of high-phosphate diet on aortic gene expression
  • organism-icon Mus musculus
  • sample-icon 15 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 2.0 ST Array (mogene20st)

Description

Uremic media calcification is not only driven by systemic factors such as hyperphosphatemia, but also crticially dependent on vascular smooth muscle cells per se. We hypothesized that the different developmental origins of vscular smooth muscle cells might lead to a heterogeneous susceptibility to develop media calcification.

Publication Title

Heterogeneous susceptibility for uraemic media calcification and concomitant inflammation within the arterial tree.

Sample Metadata Fields

Specimen part

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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